Besada-Lombana PB, et al. (2024) An extracellular glucose sensor for substrate-dependent secretion and display of cellulose-degrading enzymes. Biotechnol Bioeng 121(1):403-408 PMID:37749915
Sadeghi SA, et al. (2024) Pilot Evaluation of the Long-Term Reproducibility of Capillary Zone Electrophoresis-Tandem Mass Spectrometry for Top-Down Proteomics of a Complex Proteome Sample. J Proteome Res 23(4):1399-1407 PMID:38417052
Fan M, et al. (2023) Micro-electrochemical DO sensor with ultra-micropore matrix fabricated with femtosecond laser processing successfully applied in on-line DO monitoring for yeast culture. Biotechnol Lett 45(4):449-461 PMID:36707453
Guo L, et al. (2023) The interaction effects of pesticides with Saccharomyces cerevisiae and their fate during wine-making process. Chemosphere 328:138577 PMID:37019393
Li X, et al. (2023) MARPPI: boosting prediction of protein-protein interactions with multi-scale architecture residual network. Brief Bioinform 24(1) PMID:36502435
Wang J, et al. (2023) Engineering Saccharomyces cerevisiae YPH499 for Overproduction of Geranylgeraniol. J Agric Food Chem 71(25):9804-9814 PMID:37311098
Yur D, et al. (2023) Highly modular hepatitis B virus-like nanocarriers for therapeutic protein encapsulation and targeted delivery to triple negative breast cancer cells. J Mater Chem B 11(18):3985-3993 PMID:37083736
Zhang C, et al. (2023) Elimination of enzymes catalysis compartmentalization enhancing taxadiene production in Saccharomyces cerevisiae. Front Bioeng Biotechnol 11:1141272 PMID:36890913
Zhou P, et al. (2023) Engineered Artificial Membraneless Organelles in Saccharomyces cerevisiae To Enhance Chemical Production. Angew Chem Int Ed Engl 62(14):e202215778 PMID:36762978
Chen W, et al. (2022) Editorial: From Traditional to Modern: Progress of Molds and Yeasts in Fermented-Food Production. Front Microbiol 13:876872 PMID:35401444
Cui J, et al. (2022) Consensus mutagenesis and computational simulation provide insight into the desaturation catalytic mechanism for delta 6 fatty acid desaturase. Biochem Biophys Res Commun 586:74-80 PMID:34837835
Feng P and Chen W (2022) iRNA-m5U: A sequence based predictor for identifying 5-methyluridine modification sites in Saccharomyces cerevisiae. Methods 203:28-31 PMID:33882361
Kang J, et al. (2022) RNAInter v4.0: RNA interactome repository with redefined confidence scoring system and improved accessibility. Nucleic Acids Res 50(D1):D326-D332 PMID:34718726
Li J, et al. (2022) Functional characterization of two diacylglycerol acyltransferase 1 genes in Mortierella alpina. Lett Appl Microbiol 74(2):194-203 PMID:34755357
Li X, et al. (2022) SDNN-PPI: self-attention with deep neural network effect on protein-protein interaction prediction. BMC Genomics 23(1):474 PMID:35761175
Liu H, et al. (2022) Enhancing biofuels production by engineering the actin cytoskeleton in Saccharomyces cerevisiae. Nat Commun 13(1):1886 PMID:35393407
Lv X, et al. (2022) Editorial: From traditional to modern: Progress of molds and yeasts in fermented-food production, Volume II. Front Microbiol 13:1075162 PMID:36406431
Qi Y, et al. (2022) Mediator Engineering of Saccharomyces cerevisiae To Improve Multidimensional Stress Tolerance. Appl Environ Microbiol 88(8):e0162721 PMID:35369708
Zhang Y, et al. (2022) Methionine restriction - Association with redox homeostasis and implications on aging and diseases. Redox Biol 57:102464 PMID:36152485
Zhang Y, et al. (2022) FaSmi1 Is Essential for the Vegetative Development, Asexual Reproduction, DON Production and Virulence of Fusarium asiaticum. J Fungi (Basel) 8(11) PMID:36422010
Zhou J, et al. (2022) Exogenous artificial DNA forms chromatin structure with active transcription in yeast. Sci China Life Sci 65(5):851-860 PMID:34970711
Wu L, et al. (2021) Simultaneously deleting ADH2 and THI3 genes of Saccharomyces cerevisiae for reducing the yield of acetaldehyde and fusel alcohols. FEMS Microbiol Lett 368(15) PMID:34410369
Yuan H, et al. (2021) Isolation and characterization of yeast for the production of rice wine with low fusel alcohol content. PLoS One 16(11):e0260024 PMID:34788334
Fang T, et al. (2020) Chromatin remodeling complexes are involvesd in the regulation of ethanol production during static fermentation in budding yeast. Genomics 112(2):1674-1679 PMID:31618673
Liu K and Chen W (2020) iMRM: a platform for simultaneously identifying multiple kinds of RNA modifications. Bioinformatics 36(11):3336-3342 PMID:32134472
Lv H, et al. (2020) Evaluation of different computational methods on 5-methylcytosine sites identification. Brief Bioinform 21(3):982-995 PMID:31157855
Tsai K, et al. (2020) Role of combined cell membrane and wall mechanical properties regulated by polarity signals in cell budding. Phys Biol 17(6):065011 PMID:33085651
Yang H, et al. (2020) A comparison and assessment of computational method for identifying recombination hotspots in Saccharomyces cerevisiae. Brief Bioinform 21(5):1568-1580 PMID:31633777
Ai L, et al. (2019) The gal80 Deletion by CRISPR-Cas9 in Engineered Saccharomyces cerevisiae Produces Artemisinic Acid Without Galactose Induction. Curr Microbiol 76(11):1313-1319 PMID:31392501
Dao FY, et al. (2019) Identify origin of replication in Saccharomyces cerevisiae using two-step feature selection technique. Bioinformatics 35(12):2075-2083 PMID:30428009
Mei Q, et al. (2019) Set1-catalyzed H3K4 trimethylation antagonizes the HIR/Asf1/Rtt106 repressor complex to promote histone gene expression and chronological life span. Nucleic Acids Res 47(7):3434-3449 PMID:30759223
Chen W, et al. (2018) Direct membrane binding and self-interaction contribute to Mmr1 function in mitochondrial inheritance. Mol Biol Cell 29(19):2346-2357 PMID:30044712
He M, et al. (2018) MoSnt2-dependent deacetylation of histone H3 mediates MoTor-dependent autophagy and plant infection by the rice blast fungus Magnaporthe oryzae. Autophagy 14(9):1543-1561 PMID:29929416
Petela NJ, et al. (2018) Scc2 Is a Potent Activator of Cohesin's ATPase that Promotes Loading by Binding Scc1 without Pds5. Mol Cell 70(6):1134-1148.e7 PMID:29932904
Qin P, et al. (2018) LML1, Encoding a Conserved Eukaryotic Release Factor 1 Protein, Regulates Cell Death and Pathogen Resistance by Forming a Conserved Complex with SPL33 in Rice. Plant Cell Physiol 59(5):887-902 PMID:29566164
Yang H, et al. (2018) iRSpot-Pse6NC: Identifying recombination spots in Saccharomyces cerevisiae by incorporating hexamer composition into general PseKNC. Int J Biol Sci 14(8):883-891 PMID:29989083
Zhang G, et al. (2018) Improving the quality of matured coconut (Cocos nucifera Linn.) water by low alcoholic fermentation with Saccharomyces cerevisiae: antioxidant and volatile profiles. J Food Sci Technol 55(3):964-976 PMID:29487438
Zhang G, et al. (2018) Improving the quality of matured coconut (Cocos nucifera Linn.) water by low alcoholic fermentation with Saccharomyces cerevisiae: antioxidant and volatile profiles. J Food Sci Technol 55(3):964-976 PMID:29487438
Chen W, et al. (2017) Stepwise assembly of the earliest precursors of large ribosomal subunits in yeast. Nucleic Acids Res 45(11):6837-6847 PMID:28402444
Han L, et al. (2017) Designing and Creating a Synthetic Omega Oxidation Pathway in Saccharomyces cerevisiae Enables Production of Medium-Chain α, ω-Dicarboxylic Acids. Front Microbiol 8:2184 PMID:29163455
Siu KH and Chen W (2017) Control of the Yeast Mating Pathway by Reconstitution of Functional α-Factor Using Split Intein-Catalyzed Reactions. ACS Synth Biol 6(8):1453-1460 PMID:28505429
Yu Q, et al. (2017) Graphene oxide significantly inhibits cell growth at sublethal concentrations by causing extracellular iron deficiency. Nanotoxicology 11(9-10):1102-1114 PMID:29119849
Chen W, et al. (2016) Identifying 2'-O-methylationation sites by integrating nucleotide chemical properties and nucleotide compositions. Genomics 107(6):255-8 PMID:27191866
Ping HA, et al. (2016) Num1 anchors mitochondria to the plasma membrane via two domains with different lipid binding specificities. J Cell Biol 213(5):513-24 PMID:27241910
Chen W, et al. (2015) Benchmark data for identifying N(6)-methyladenosine sites in the Saccharomyces cerevisiae genome. Data Brief 5:376-8 PMID:26958595
Chen W, et al. (2015) Identification and analysis of the N(6)-methyladenosine in the Saccharomyces cerevisiae transcriptome. Sci Rep 5:13859 PMID:26343792
Chen W, et al. (2015) Identifying protein complexes based on the integration of PPI network and gene expression data. Int J Bioinform Res Appl 11(1):30-44 PMID:25667384
Yu X, et al. (2015) High-level expression and characterization of carboxypeptidase Y from Saccharomyces cerevisiae in Pichia pastoris GS115. Biotechnol Lett 37(1):161-7 PMID:25214228
Chen W, et al. (2014) A universal chemical enrichment method for mapping the yeast N-glycoproteome by mass spectrometry (MS). Mol Cell Proteomics 13(6):1563-72 PMID:24692641
Chen W, et al. (2014) Comprehensive analysis of protein N-glycosylation sites by combining chemical deglycosylation with LC-MS. J Proteome Res 13(3):1466-73 PMID:24490756
Huang B, et al. (2013) ERG9 and COQ1 disruption reveals isoprenoids biosynthesis is closely related to mitochondrial function in Saccharomyces cerevisiae. Integr Biol (Camb) 5(10):1282-96 PMID:24056878
Li Y, et al. (2013) Molecular cloning and evolutionary analysis of the HOG-signaling pathway genes from Saccharomyces cerevisiae rice wine isolates. Biochem Genet 51(3-4):296-305 PMID:23338673
Liu F, et al. (2013) Functional assembly of a multi-enzyme methanol oxidation cascade on a surface-displayed trifunctional scaffold for enhanced NADH production. Chem Commun (Camb) 49(36):3766-8 PMID:23535691
Xu L and Chen W (2013) Random T-DNA mutagenesis identifies a Cu/Zn superoxide dismutase gene as a virulence factor of Sclerotinia sclerotiorum. Mol Plant Microbe Interact 26(4):431-41 PMID:23252459
Xu X, et al. (2013) The yeast Shu complex utilizes homologous recombination machinery for error-free lesion bypass via physical interaction with a Rad51 paralogue. PLoS One 8(12):e81371 PMID:24339919
Chen W, et al. (2012) iNuc-PhysChem: a sequence-based predictor for identifying nucleosomes via physicochemical properties. PLoS One 7(10):e47843 PMID:23144709
Gallo-Ebert C, et al. (2012) Arv1 lipid transporter function is conserved between pathogenic and nonpathogenic fungi. Fungal Genet Biol 49(2):101-13 PMID:22142782
Jacklin N, et al. (2012) Noniterative convex optimization methods for network component analysis. IEEE/ACM Trans Comput Biol Bioinform 9(5):1472-81 PMID:22641712
Goyal G, et al. (2011) Simultaneous cell growth and ethanol production from cellulose by an engineered yeast consortium displaying a functional mini-cellulosome. Microb Cell Fact 10:89 PMID:22044771
Wan Y, et al. (2011) Transcriptome profiling reveals a novel role for trichostatin A in antagonizing histone chaperone Chz1 mediated telomere anti-silencing. FEBS Lett 585(15):2519-25 PMID:21763693
Shah D, et al. (2010) Enhanced arsenic accumulation in Saccharomyces cerevisiae overexpressing transporters Fps1p or Hxt7p. J Biotechnol 150(1):101-7 PMID:20638426
Chattopadhyay MK, et al. (2009) Microarray studies on the genes responsive to the addition of spermidine or spermine to a Saccharomyces cerevisiae spermidine synthase mutant. Yeast 26(10):531-44 PMID:19688718
Seefeldt T, et al. (2009) Characterization of a novel dithiocarbamate glutathione reductase inhibitor and its use as a tool to modulate intracellular glutathione. J Biol Chem 284(5):2729-2737 PMID:19049979
Huang B, et al. (2008) Heterologous production of secondary metabolites as pharmaceuticals in Saccharomyces cerevisiae. Biotechnol Lett 30(7):1121-37 PMID:18512022
Wang Y, et al. (2005) Cdc24 regulates nuclear shuttling and recruitment of the Ste5 scaffold to a heterotrimeric G protein in Saccharomyces cerevisiae. J Biol Chem 280(13):13084-96 PMID:15657049
Chen W, et al. (2003) Enp1, a yeast protein associated with U3 and U14 snoRNAs, is required for pre-rRNA processing and 40S subunit synthesis. Nucleic Acids Res 31(2):690-9 PMID:12527778
Huang M, et al. (2001) Crystal structure of Sar1-GDP at 1.7 A resolution and the role of the NH2 terminus in ER export. J Cell Biol 155(6):937-48 PMID:11739406
Landolt-Marticorena C, et al. (2000) Evidence that the NH2 terminus of vph1p, an integral subunit of the V0 sector of the yeast V-ATPase, interacts directly with the Vma1p and Vma13p subunits of the V1 sector. J Biol Chem 275(20):15449-57 PMID:10747882
Raucher D, et al. (2000) Phosphatidylinositol 4,5-bisphosphate functions as a second messenger that regulates cytoskeleton-plasma membrane adhesion. Cell 100(2):221-8 PMID:10660045
Chen W and Jinks-Robertson S (1999) The role of the mismatch repair machinery in regulating mitotic and meiotic recombination between diverged sequences in yeast. Genetics 151(4):1299-313 PMID:10101158
Chen W, et al. (1999) Suppressor analysis of mutations in the 5'-untranslated region of COB mRNA identifies components of general pathways for mitochondrial mRNA processing and decay in Saccharomyces cerevisiae. Genetics 151(4):1315-25 PMID:10101159
Zhang B, et al. (1999) [Distinction of yeast flocculent phenotypes and studies of the physiological and biochemical characteristics of yeast flocculation]. Wei Sheng Wu Xue Bao 39(6):527-32 PMID:12555558
Chen W and Jinks-Robertson S (1998) Mismatch repair proteins regulate heteroduplex formation during mitotic recombination in yeast. Mol Cell Biol 18(11):6525-37 PMID:9774668
Chen W and Dieckmann CL (1997) Genetic evidence for interaction between Cbp1 and specific nucleotides in the 5' untranslated region of mitochondrial cytochrome b mRNA in Saccharomyces cerevisiae. Mol Cell Biol 17(11):6203-11 PMID:9343381
Emmons S, et al. (1995) Cappuccino, a Drosophila maternal effect gene required for polarity of the egg and embryo, is related to the vertebrate limb deformity locus. Genes Dev 9(20):2482-94 PMID:7590229
Chen W and Struhl K (1989) Yeast upstream activator protein GCN4 can stimulate transcription when its binding site replaces the TATA element. EMBO J 8(1):261-8 PMID:2653813
Chen W and Struhl K (1988) Saturation mutagenesis of a yeast his3 "TATA element": genetic evidence for a specific TATA-binding protein. Proc Natl Acad Sci U S A 85(8):2691-5 PMID:3282236
Struhl K, et al. (1988) Transcriptional activation by yeast GCN4, a functional homolog to the jun oncoprotein. Cold Spring Harb Symp Quant Biol 53 Pt 2:701-9 PMID:3151184
Chen W, et al. (1987) Distinguishing between mechanisms of eukaryotic transcriptional activation with bacteriophage T7 RNA polymerase. Cell 50(7):1047-55 PMID:3304661
Chen W and Struhl K (1985) Yeast mRNA initiation sites are determined primarily by specific sequences, not by the distance from the TATA element. EMBO J 4(12):3273-80 PMID:3912167