Varier RA, et al. (2022)N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in yeast. Elife 11 PMID:36422864
Chia M, et al. (2021) High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts. Genome Biol 22(1):34 PMID:33446241
Chia M, et al. (2021) Author Correction: High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts. Genome Biol 22(1):46 PMID:33494761
Moretto F, et al. (2021) Transcription levels of a noncoding RNA orchestrate opposing regulatory and cell fate outcomes in yeast. Cell Rep 34(3):108643 PMID:33472063
Strittmatter LM, et al. (2021) psiCLIP reveals dynamic RNA binding by DEAH-box helicases before and after exon ligation. Nat Commun 12(1):1488 PMID:33674615
Cakiroglu A, et al. (2019) Genome-wide reconstitution of chromatin transactions reveals that RSC preferentially disrupts H2AZ-containing nucleosomes. Genome Res 29(6):988-998 PMID:31097474
Cakiroglu SA, et al. (2016) Backmasking in the yeast genome: encoding overlapping information for protein-coding and RNA degradation. Nucleic Acids Res 44(17):8065-72 PMID:27492286
Castelnuovo M, et al. (2014) Role of histone modifications and early termination in pervasive transcription and antisense-mediated gene silencing in yeast. Nucleic Acids Res 42(7):4348-62 PMID:24497191
Zaugg JB and Luscombe NM (2012) A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast. Genome Res 22(1):84-94 PMID:21930892
Reimand J, et al. (2010) Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets. Nucleic Acids Res 38(14):4768-77 PMID:20385592
Balaji S, et al. (2006) Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast. J Mol Biol 360(1):213-27 PMID:16762362
Echols N, et al. (2002) Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes. Nucleic Acids Res 30(11):2515-23 PMID:12034841
Luscombe NM, et al. (2002) The dominance of the population by a selected few: power-law behaviour applies to a wide variety of genomic properties. Genome Biol 3(8):RESEARCH0040 PMID:12186647