Reference: Hettema EH, et al. (2003) Retromer and the sorting nexins Snx4/41/42 mediate distinct retrieval pathways from yeast endosomes. EMBO J 22(3):548-57

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Abstract


The endocytic pathway in yeast leads to the vacuole, but resident proteins of the late Golgi, and some endocytosed proteins such as the exocytic SNARE Snc1p, are retrieved specifically to the Golgi. Retrieval can occur from both a late pre-vacuolar compartment and early or 'post-Golgi' endosomes. We show that the endosomal SNARE Pep12p, and a mutant version that reaches the cell surface and is endocytosed, are retrieved from pre-vacuolar endosomes. As with Golgi proteins, this requires the sorting nexin Grd19p and components of the retromer coat, supporting the view that endosomal and Golgi residents both cycle continuously between the exocytic and endocytic pathways. In contrast, retrieval of Snc1p from post-Golgi endosomes requires the sorting nexin Snx4p, to which Snc1p can be cross-linked. Snx4p binds to Snx41p/ydr425w and to Snx42p/ydl113c, both of which are also required for efficient Snc1p sorting. Our findings suggest a general role for yeast sorting nexins in protein retrieval, rather than degradation, and indicate that different sorting nexins operate in different classes of endosomes.

Reference Type
Journal Article | Research Support, Non-U.S. Gov't
Authors
Hettema EH, Lewis MJ, Black MW, Pelham HR
Primary Lit For
SNX41 | ATG20 | SNX4 | SNX3 | SNX4-ATG20 sorting nexin complex | SNX4-SNX41 sorting nexin complex
Additional Lit For
SNC1 | PEP12

Gene Ontology Annotations


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Gene/Complex Qualifier Gene Ontology Term Aspect Annotation Extension Evidence Method Source Assigned On Reference

Phenotype Annotations 1 entry for 1 gene


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GenePhenotypeExperiment TypeMutant InformationStrain BackgroundChemicalDetails
SNX41protein transport: abnormal
Reporter: Snc1p
classical geneticsnull
Allele: snx41-Δ
S288CDetails: mutant accumulates Snc1p in vacuoles
Showing 1 to 1 of 1 entries

Interaction Annotations


Genetic Interactions

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Interactor Interactor Allele Assay Annotation Action Phenotype SGA score P-value Source Reference

Physical Interactions 5 entries for 4 genes

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InteractorInteractorAssayAnnotationActionModification
ATG20SNX4Affinity Capture-Westernmanually curatedBait-HitNo Modification
ATG20SNX4Affinity Capture-Westernmanually curatedHit-BaitNo Modification

Crosslinking

SNC1SNX4Affinity Capture-Westernmanually curatedBait-HitNo Modification
SNX41SNX4Affinity Capture-Westernmanually curatedHit-BaitNo Modification
SNX41SNX4Affinity Capture-Westernmanually curatedBait-HitNo Modification
Showing 1 to 5 of 5 entries