"(T)he truth of a theory lies in the deductive methods used to establish it and the experimental demonstration of its fundamental premises and consequences." - Jacques Monod I had the good fortune, early on, to be gripped by a scientific problem - gene regulation - that had ramifications beyond what I imagined. Its unfoldings have kept me enthralled ever since. We began with bacteria - and especially with bacteriophage lambda (lambda) - and then moved to work with yeast and mammalian cells. We always sought coherent descriptions, ideas that would apply to apparently disparate cases - regulation of prokaryotic and eukaryotic genes, for example, despite the fact that the latter, but not the former, are sequestered in a nucleus and wrapped in nucleosomes. My goal here is to put the various stages of our understanding, from the beginning of my involvement, in an overarching context. I might not say anything that has not been said by others or me, but my hope is that otherwise obscure connections and simplifications will be made clear. I hope I avoid distortions, but I cannot cite all the important contributions of others. More detailed explanations for various experiments and arguments, along with more extensive references, can be found in my two books and in the references here (1, 2). Where I refer to "we", I of course mean to include the crucial roles of this or that student or postdoctoral fellow. They are identified in the reference list but not in the text.
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Evidence ID | Analyze ID | Gene/Complex | Systematic Name/Complex Accession | Qualifier | Gene Ontology Term ID | Gene Ontology Term | Aspect | Annotation Extension | Evidence | Method | Source | Assigned On | Reference |
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Evidence ID | Analyze ID | Gene | Gene Systematic Name | Phenotype | Experiment Type | Experiment Type Category | Mutant Information | Strain Background | Chemical | Details | Reference |
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Evidence ID | Analyze ID | Gene | Gene Systematic Name | Disease Ontology Term | Disease Ontology Term ID | Qualifier | Evidence | Method | Source | Assigned On | Reference |
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Evidence ID | Analyze ID | Regulator | Regulator Systematic Name | Target | Target Systematic Name | Direction | Regulation of | Happens During | Regulator Type | Direction | Regulation Of | Happens During | Method | Evidence | Strain Background | Reference |
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Site | Modification | Modifier | Source | Reference |
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Evidence ID | Analyze ID | Interactor | Interactor Systematic Name | Interactor | Interactor Systematic Name | Allele | Assay | Annotation | Action | Phenotype | SGA score | P-value | Source | Reference | Note |
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Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details about experiment type and any other genes involved in the interaction.
Evidence ID | Analyze ID | Interactor | Interactor Systematic Name | Interactor | Interactor Systematic Name | Assay | Annotation | Action | Modification | Source | Reference | Note |
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Complement ID | Locus ID | Gene | Species | Gene ID | Strain background | Direction | Details | Source | Reference |
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Evidence ID | Analyze ID | Dataset | Description | Keywords | Number of Conditions | Reference |
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