Reference: Floch AG, et al. (2015) Nuclear pore targeting of the yeast Pom33 nucleoporin depends on karyopherin and lipid binding. J Cell Sci 128(2):305-16

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Abstract


Pom33 is an integral membrane protein of the yeast nuclear pore complex (NPC), and it is required for proper NPC distribution and assembly. To characterize the Pom33 NPC-targeting determinants, we performed immunoprecipitation experiments followed by mass spectrometry analyses. This identified a new Pom33 partner, the nuclear import factor Kap123. In vitro experiments revealed a direct interaction between the Pom33 C-terminal domain (CTD) and Kap123. In silico analysis predicted the presence of two amphipathic α-helices within Pom33-CTD. Circular dichroism and liposome co-flotation assays showed that this domain is able to fold into α-helices in the presence of liposomes and preferentially binds to highly curved lipid membranes. When expressed in yeast, under conditions abolishing Pom33-CTD membrane association, this domain behaves as a Kap123-dependent nuclear localization signal (NLS). Although deletion of Pom33 C-terminal domain (Pom33(ΔCTD)-GFP) impaired Pom33 stability and NPC targeting, mutants affecting either Kap123 binding or the amphipathic properties of the α-helices did not display any detectable defect. However, combined impairment of lipid and Kap123 binding affects targeting of Pom33 to NPCs. These data highlight the requirement of multiple determinants and mechanisms for proper NPC localization of Pom33.

Reference Type
Journal Article | Research Support, Non-U.S. Gov't
Authors
Floch AG, Tareste D, Fuchs PF, Chadrin A, Naciri I, Léger T, Schlenstedt G, Palancade B, Doye V
Primary Lit For
KAP123 | POM33 | Nuclear pore complex

Interaction Annotations


Genetic Interactions

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Interactor Interactor Allele Assay Annotation Action Phenotype SGA score P-value Source Reference

Physical Interactions 37 entries for 24 genes

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InteractorInteractorAssayAnnotationActionModification
ELO2POM33Affinity Capture-MSmanually curatedHit-BaitNo Modification
ELO2PER33Affinity Capture-MSmanually curatedHit-BaitNo Modification
ETR1POM33Affinity Capture-MSmanually curatedHit-BaitNo Modification
ETR1PER33Affinity Capture-MSmanually curatedHit-BaitNo Modification
KAP104POM33Reconstituted Complexmanually curatedBait-HitNo Modification
KAP114POM33Reconstituted Complexmanually curatedBait-HitNo Modification
KAP123POM33Affinity Capture-MSmanually curatedHit-BaitNo Modification
KAP123PER33Affinity Capture-MSmanually curatedHit-BaitNo Modification
KAP123POM33Affinity Capture-Westernmanually curatedHit-BaitNo Modification
KAP123POM33Reconstituted Complexmanually curatedBait-HitNo Modification
Showing 1 to 10 of 37 entries